Given a gene id, retrieve GO terms.

Given an OGS gene id, retrieve database cross reference id (RefSeq) with symbols and descriptions.

Retrieve gene ids and their aliases for an organism. Multiple gene sets may be returned if the gene source is not selected. See the Data Source page for gene source names.This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given an Alias ID, retrieve Gene ID, optionally constrained by gene source. This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given an A. mellifera transcript id, retrieve expression and metadata. This version does not provide options for additional constraints.

Given two organism names, retrieve GO terms for the first organism, and orthologues from the second organism.

Given a Gene Symbol, retrieve GO terms.

Given a gene id, retrieve all homologues.

Given an A. mellifera transcript id, retrieve expression and expression metadata optionally filtered by expression level and RNAseq sample tissue, treatment and sex.

Given a gene alias id, retrieve genes and gene database cross references. This is useful for converting from old to new OGS. This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given two gene sources for an organism (e.g. OGS and NCBI) retrieve all gene ids with their database cross references. Note that some genes or their cross references may be present in multiple output rows due to split or merged gene models. You can check for this using the Column Summaries above the columns.

Given a gene id or symbol, retrieve transcript ids and locations and exon coordinates.

Retrieve gene ids and UniProt protein ids from a gene set. Multiple gene sets will be retrieved for organisms that have more than one gene set, unless the optional constraint to specify gene set is used. Output will include only ids that correspond to a UniProt id.

Given two gene sources for an organism (e.g. OGS and RefSeqI) retrieve all gene ids with their database cross references, symbols and descriptions. For this to work, the first gene source must be OGS and the second gene source must be RefSeq, Note that some genes or their cross references may be present in multiple output rows due to split or merged gene models. You can check for this using the Column Summaries above the columns.

Given a gene id, retrieve the coding sequences.

Given a gene id, retrieve database cross reference id.

Given a gene id, retrieve pathways.

Retrieve all the gene ids from source 1 with database cross reference ids from source 2, with symbols and descriptions. To retrieve symbols and descriptions, source 2 should be RefSeq. The sources must be the same species.

Given a GO term, retrieve genes annotated with that GO Term for an organism, optionally constrained by GO evidence code.

Given a gene id, retrieve gene symbol and description.

Given a gene id for organism 1, retrieve homologues and pathways for organism 2.

Given a gene id for a non-A. mellifera organism, retrieve A. mellifera homologues and transcript ids, expression levels and pathways for those homologues.

Retrieve all aliases, gene ids and database cross references for a given organism. If the gene source is not selected, output may include multiple gene sets.This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given a gene id, retrieve gene symbol and go terms.

Retrieve genes located on a chromosome for an organism.

Given an A. mellifera gene id, retrieve transcript id(s), expression and metadata.

Given a gene id, retrieve gene alias id. This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given an A. mellifera sequence variant id (dbSNP RS id), retrieve consequence, whether or not the SNP is located in a transcript.

Given a Gene id, retrieve OrthoDB homologues for the selected species.

Given a gene symbol and organism, retrieve homologues and GO terms of homologues.

Select a RefSeq gene set to retrieve all gene symbols and descriptions.

Given a gene id, retrieve gene alias ids and database cross references. This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given a Gene id retrieve transcript id(s). This is especially useful for RefSeq gene sets,

Given a gene id or symbol, retrieve chromosome and coordinates.

Given a gene id, retrieve A. mellifera homologues with their transcripts and expression levels.

Given a gene symbol, retrieve proteins (UniProt).

Given an A. mellifera transcript id, retrieve sequence variants and consequences.

Retrieve all transcript ids, gene ids and database crossreference ids for a given organism. Multiple gene sets may be returned if the optional gene source constraint is not used. Output will be included for all transcripts, regardless if the gene has a database cross reference. There may be more than one database cross reference for a single gene.

Given a gene source and species, retrieve D. melanogaster homologues and their gene symbols and descriptions.

Given the gene source, retrieve all gene ids. This template is useful for creating a whole-gene-set background population for the enrichment widgets if you save the output as a list.

Given a CDS ID, retrieve gene id and symbol. This is useful for a list of CDS retrieved from a regions search.

Given an A. mellifera sequence variant id (dbSNP RS id), retrieve overlapping transcripts and variant consequence.

Retrieve all proteins (UniProt) for a particular organism.

Given a GO term, retrieve genes annotated with that GO Term for all organisms, optionally constrained by GO evidence code.

Retrieve all the miRNAs for an organism.

Given a transcript ID, retrieve gene ID and symbol.

Given a non-A.mellifera organism, retrieve all A. mellifera orthologues with their pathways.

Given an organism, retrieve all transcript ids with their gene ids and alias ids. Multiple gene sets may be retrieved if the optional gene source constraint is not selected. This template can be used for A. dorsata, A. florea, A. mellifera, B. impatiens, B. terrestris, L. humile, P. barbatus, W. auropuncata.

Given a UniProt id, retrieve gene id.

Given a gene symbol, retrieve gene id.

Given a transcript alias id, retrieve transcript and gene id. This template should be used for A. echinatior, C. biroi, C. floridanus, D. novaeangliae, E. Mexicana, H. laboriosa, H. saltator, L. albipes, M. quadrifasciata, M. rotundata, S. invicta.

Given a gene id retrieve transcripts and proteins.

Given a gene id, retrieve publications.

Given a transcript alias id, retrieve primary transcript id and gene id, gene database cross reference id, and gene description. This template can be used for A. echinatior, C. biroi, C. floridanus, D. novaeangliae, E. Mexicana, H. laboriosa, H. saltator, L. albipes, M. quadrifasciata, M. rotundata, S. invicta.

Given a transcript id, retrieve transcript alias id.

Retrieve all genes and their chromosomal locations for an organism.

Given a transcript id, retrieve transcript alias id. This template can be used for A. echinatior, C. biroi, C. floridanus, D. novaeangliae, E. Mexicana, H. laboriosa, H. saltator, L. albipes, M. quadrifasciata, M. rotundata, S. invicta.

Retrieve all publications with gene ids from an organism.

Given a gene id, retrieve transcript ids and protein ids from the gene source.