This page lists all data sources loaded along with the date the data was downloaded and related publication. NOTE: All external links open in a new window.
| Data Category | Description | Organism | Source | PubMed | Link |
|---|---|---|---|---|---|
|
Genes |
Consortium Official Gene Set | M. rotundata | Megachile_rotundata_v1.1 | Kapheim KM et al PubMed: 25977371 | HGD BeeBase |
| A. echinatior | aech_OGSv3.8 | Nygard et al PubMed: 21719571 | HGD Ant Genomes | ||
| A. mellifera | amel_OGSv3.2 |
Elsik et al PubMed: 24479613 Honeybee Genome Sequencing Consortium. PubMed: 17073008 |
HGD BeeBase | B. impatiens | Bombus_impatiens_v1.2 | Sadd et al PubMed: 25908251 | HGD BeeBase |
| C. floridanus | cflo_OGSv3.3 |
Bonasio et al PubMed: 20798317 | HGD Ant Genomes | ||
| C. obscurior | cobs_OGSv1.4 | Schrader et al PubMed: 25510865 | HGD Ant Genomes | ||
| H. saltator |
hsal_OGSv3.3 |
Bonasio et al PubMed: 20798317 | HGD Ant Genomes | ||
| L. albipes | lalb_OGSv5.42 | Kocher et al PubMed: 24359881 | HGD BeeBase | ||
| L. humile | lhum_OGSv1.2 | Smith et al PubMed: 21282631 | HGD Ant Genomes | ||
| P. barbatus | pbar_OGSv1.2 | Smith et al PubMed: 21282651 | HGD Ant Genomes | ||
| S. invicta | sinv_OGSv2.2.3 | Wurm et al PubMed: 21282665 | HGD Ant Genomes | ||
| N. vitripennis | nvit_OGSv1.2 | Werren JH et al PubMed: 20075255 | HGD NasoniaBase | ||
| N. vitripennis | nvit2_evigenes_pub11u | Rago A et al PubMed: 27561358 | HGD NasoniaBase | ||
| D. novaeangliae | Dufourea_novaeangliae_v1.1 | Kapheim KM et al PubMed: 25977371 | HGD BeeBase | ||
| E. mexicana | Eufriesea_mexicana_v1.1 | Kapheim KM et al PubMed: 25977371 | HGD BeeBase | ||
| H. laboriosa | Habropoda_laboriosa_v1.2 | Kapheim KM et al PubMed: 25977371 | HGD BeeBase | ||
| M. quadrifasciata | Melipona_quadrifasciata_v1.1 | Kapheim KM et al PubMed: 25977371 | HGD BeeBase | ||
| C. biroi | armyant.OGS.V1.8.6 | Oxley PR et al PubMed: 24508170 | HGD Ant Genomes | ||
| NCBI Annotation (RefSeq and Gene) | A. dorsata | Ador_NCBI-Release 100 | O'Leary NA et al - PubMed: 26553804 |
NCBI ftp | |
| A. echinatior | RefSeq-Release 100 | NCBI ftp | |||
| A. mellifera | Amel_NCBI-Release 102 | NCBI ftp | |||
| B. impatiens | Bimp_NCBI-Release 101 | NCBI ftp | |||
| B. terrestris | Bter_NCBI-Release 101 | NCBI ftp | |||
| C. floridanus | RefSeq-Release 100 | NCBI ftp | |||
| H. saltator | RefSeq-Release 100 | NCBI ftp | |||
| L. humile | RefSeq-Release 100 | NCBI ftp | |||
| P. barbatus | RefSeq-Release 100 | NCBI ftp | |||
| N. vitripennis | RefSeq-Release 101 | NCBI ftp | |||
| S. invicta | RefSeq-Release 100 | NCBI ftp | |||
| C. biroi | RefSeq-Release 100 | NCBI ftp | |||
| A. florea | RefSeq-Release 101 | NCBI ftp | |||
| W. auropunctata | RefSeq-Release 100 | NCBI ftp | |||
| D. novaeangliae | RefSeq-Release 100 | NCBI ftp | |||
| M. rotundata | RefSeq-Release 101 | NCBI ftp | |||
Homology |
Orthologue relationships from OrthoDB | A. dorsata | OrthoDB Version 9 | Zdobnov EM et al - PubMed: 27899580 | OrthoDB ftp |
| A. mellifera | |||||
| A. echinatior | |||||
| A. florea | |||||
| B. impatiens | |||||
| B. terrestris | |||||
| C. floridanus | |||||
| H. saltator | |||||
| L. humile | |||||
| N. vitripennis | |||||
| P. barbatus | |||||
| S. invicta | |||||
| D. melanogaster | |||||
| C. obscurior | |||||
| C. biroi | |||||
| D. novaeangliae | |||||
| E. mexicana | |||||
| H. laboriosa | |||||
| L. albipes | |||||
| M. rotundata | |||||
| W. auropunctata | |||||
| M. quadrifasciata | |||||
Proteins |
Protein Annotations from UniProt | A. dorsata | UniProt Release 2017_01 | UniProt Consortium PubMed: 27899622 | UniProt FTP |
| A. echinatior | |||||
| A. mellifera | |||||
| B. impatiens | |||||
| B. terrestris | |||||
| C. floridanus | |||||
| H. saltator | |||||
| L. humile | |||||
| P. barbatus | |||||
| N. vitripennis | |||||
| S. invicta | |||||
| C. biroi | |||||
| D. novaeangliae | |||||
| A. florea | |||||
| M. rotundata | |||||
| D. melanogaster | |||||
| Protein family and domain assignments to proteins from InterPro | A. dorsata | InterPro Version 61 | Finn RD et al PubMed: 27899635 | InterPro ftp | |
| A. echinatior | |||||
| A. mellifera | |||||
| B. impatiens | |||||
| B. terrestris | |||||
| C. floridanus | |||||
| H. saltator | |||||
| L. humile | |||||
| P. barbatus | |||||
| N. vitripennis | |||||
| S. invicta | |||||
| C. biroi | |||||
| D. novaeangliae | |||||
| A. florea | |||||
| M. rotundata | |||||
| D. melanogaster | |||||
Gene Ontology |
GO Annotations | A. dorsata | UniProt Release 2015_08 | UniProt Consortium - PubMed: 27899622 UniProt-GOA -Huntley RP et al - PubMed: 25378336 Gene Ontology C - PubMed: 25428369 |
|
| A. echinatior | |||||
| A. mellifera | |||||
| B. impatiens | |||||
| B. terrestris | |||||
| C. floridanus | |||||
| H. saltator | |||||
| L. humile | |||||
| P. barbatus | |||||
| N. vitripennis | |||||
| S. invicta | |||||
| C. biroi | |||||
| D. novaeangliae | |||||
| A. florea | |||||
| M. rotundata | |||||
| D. melanogaster | |||||
|
Expression |
RNA-seq gene expression computed on reference gene set OGSv3.2 | A. mellifera | NCBI-SRA-Sept 2014, HGD | Kodama et al PubMed: 22009675 | NCBI SRA |
Genome Assembly |
Chromosome Assembly | A. dorsata | Ador_1.3(GCF_000469605.1) | Suen et al PubMed: 21347285 | NCBI ftp |
| A. echinatior | Aech_3.9 (GCF_000204515.1) | Nygard et al PubMed: 21719571 | NCBI ftp | ||
| A. mellifera | Amel_4.5 (GCF_000002195.4) | Elsik et al PubMed: 24479613 | NCBI ftp | ||
| B. impatiens | BIMP_2.0 (GCF_000188095.1) | Sadd et al PubMed: 25908251 |
NCBI ftp | ||
| B. terrestris | Bter_1.0 (GCF_000214255.1) | Sadd et al PubMed: 25908251 |
NCBI ftp | ||
| C. floridanus | CamFlo_1.0 (GCF_000147175.1) | Bonasio et al PubMed: 20798317 | NCBI ftp | ||
| C. obscurior | Cobs_1.4 | Schrader et al PubMed: 25510865 |
HGD Ant Genomes | ||
| H. saltator | HarSal_1.0 (GCF_000147195.1) | Bonasio et al PubMed: 20798317 | NCBI ftp | ||
| L. albipes | Lalb_v2 | Kocher et al PubMed: 24359881 | HGD BeeBase | ||
| L. humile | Lhum_UMD_V04 (GCF_000217595.1) | Smith et al PubMed: 21282631 | NCBI ftp | ||
| N. vitripennis | Nvit_2.1 (GCF_000002325.3) | Werren et al PubMed: 20075255 |
NCBI ftp | ||
| P. barbatus | Pbar_UMD_V03 (GCF_000187915.1) | Smith et al PubMed: 21282651 | NCBI ftp | ||
| S. invicta | Si_gnG (GCF_000188075.1) | Wurm et al PubMed: 21282665 |
NCBI ftp | ||
| W. auropunctata | wasmannia.A_1.0(GCF_000956235.1) |
NCBI ftp | |||
| A. florea | Aflo_1.0(GCF_000184785.2) |
NCBI ftp | |||
| C. biroi | armyant.OGS.V1.8.6(GCF_000611835.1) |
NCBI ftp | |||
| D. novaeangliae | ASM127255v1(GCF_001272555.1) |
NCBI ftp | |||
| E. mexicana | emex_1.1 |
HGD BeeBase | |||
| M. rotundata | mrot_1.0(GCF_000220905.1) |
HGD BeeBase | NCBI ftp | ||
| M. quadrifasciata | mqua_1.1 |
HGD BeeBase | |||
| H. laboriosa | hlab_1.2 |
HGD BeeBase | |||
Publications |
Gene versus publications | A. dorsata | NCBI PubMed - Dec 2014 | NCBI Resource Coordinators PubMed: 27899561 | NCBI FTP |
| A. mellifera | |||||
| A. echinatior | |||||
| A. florea | |||||
| B. impatiens | |||||
| B. terrestris | |||||
| C. floridanus | |||||
| H. saltator | |||||
| L. humile | |||||
| N. vitripennis | |||||
| P. barbatus | |||||
| S. invicta | |||||
| D. melanogaster | |||||
| M. rotundata | |||||
Pathways |
Pathway information inferred through orthologues from curated human pathways |
D. melanogaster |
Reactome - version 59, January 2017 | Croft et al - PubMed 24243840 | Reactome Download |
| Pathway information |
D. melanogaster |
Fly Reactome | Fabregat A et al - PubMed 26656494 | Flyreactome | |
| Pathway information |
A. mellifera N. vitripennis D. mellifera |
KEGG | Kanehisa M et al - PubMed 22080510 | Kegg |
Variant |
dbSNP data | A. mellifera | dbSNP Build ID=127 | Sherry ST et al - PubMed 11125122 | NCBI dbsnp |
Interactions |
Interactions |
D. melanogaster |
BioGRID - Version 3.4.144 | Chatr-Aryamontri et al - PubMed 27980099 | BioGRID Download |
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